Digital pathology infrastructure

From scanner output to structured pathology data.

DPARS is a modular orchestration platform designed to connect heterogeneous whole-slide imaging workflows with metadata intelligence, quality control, standards-based conversion, delivery and retention-aware archival.

DPARS — Digital Pathology Analysis & Retrieval System
One coordinated platform

A modular journey for every whole-slide image.

DPARS separates responsibilities into observable services so each step can evolve independently while preserving provenance across the workflow.

Digital Pathology Workflow

DPARS closes the operational gap.

Inspired by the DPARS presentation: heterogeneous scanner output enters a controlled, traceable processing layer before clinical delivery. The workflow below stays inside a horizontally scrollable frame on smaller screens.

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INPUT

Scanners

SVS · NDPI · TIFF · other WSI formats

→
⌁
01

Format handling

Routes heterogeneous scanner output into the appropriate DPARS path.

→
⌕
02

BabelShark

Reads label and file metadata, resolves identity and standardizes naming.

→
✓
03

Quality Control

Evaluates focus, sharpness and image-quality signals before downstream processing.

→
◇
04 · WHEN NEEDED

WSI-Forge

Creates a normalized full-resolution WSI derivative for supported routing scenarios.

→
D
05

Dicomizer

Creates standards-oriented DICOM WSI output with validation.

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↑
06

Uploader

Tracks delivery state, retries and transfer toward PACS.

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▤
CLINICAL DESTINATION

PACS / WSI

Managed access for the diagnostic workflow.

Dagsterorchestration · runs · recovery
PostgreSQLstate · lineage · traceability
Dashboardmonitoring · review · operations
Wall-Eretention · archival lifecycle
Service constellation

Specialized services. Shared lineage.

⌁

Metadata intelligence

Multi-route metadata extraction combines fast paths with deeper barcode and OCR strategies when needed.

BABELSHARK →
◫

Quality gates

Image-quality metrics create explicit checkpoints before downstream conversion and delivery.

QC →
◇

Interoperability

Format-aware normalization and DICOM conversion reduce dependence on a single scanner ecosystem.

WSI-FORGE + DICOMIZER →
↗

Controlled delivery

Transfer state, retries, durations and failures remain observable rather than disappearing into a black box.

UPLOADER →
◌

Archival lifecycle

Long-term storage policy is separated from the clinical processing path and governed by validation-first rules.

WALL-E →
◎

Orchestration & audit

Database-backed lineage and orchestration provide a coherent operational view across independently evolving modules.

DPARS CORE →
Architecture principle

Processing and archival are intentionally separated.

Full-resolution derivatives support active processing. Reduced-resolution archival derivatives belong to a separate lifecycle and never re-enter the processing pipeline.

Active processing path

Scanner → metadata/routing → quality gate → normalization when required → DICOM conversion → controlled delivery.

Long-term archival path

Database-driven retention eligibility → reduced-resolution OME-TIFF derivative → independent validation → future cleanup eligibility under fail-closed safety rules.

DPARS Team

Leadership and ownership, in one view.

Scientific leadership and project responsibilities are shown together—without turning the team into a ranking.

CW
SCIENTIFIC LEADERSHIP

Prof. Dr. med. Cleo-Aron Weis, M.Sc.

Scientific Supervisor

Scientific supervision and strategic oversight of DPARS; Head of Computational Pathology Heidelberg.

SA
PROJECT & TECHNICAL LEADERSHIP

Shahram Aliyari, M.Sc.

Project Lead & Coordinator · Platform Architecture

Overall project coordination, platform architecture, cross-service integration, orchestration and data-lineage design; responsibility for BabelShark, WSI-Forge and Wall-E.

BT
SERVICE OWNERSHIP

Balamurugan Thirukonda S. B.

Quality Control

Responsible for the DPARS Quality Control service and its operational integration.

ML
SERVICE OWNERSHIP

Maximilian Legnar, M.Sc.

Dicomizer · Uploader

Responsible for DICOM conversion and the downstream upload service.

Institutional affiliation/titles and DPARS project responsibilities are intentionally separated. Portrait blocks are ready for approved public profile photographs.

Why DPARS

Built for heterogeneous digital pathology.

DPARS focuses on the operational gap between scanner output and downstream clinical or research systems: identity, metadata, quality, interoperability, traceability and lifecycle management. The architecture is modular so individual services can be tested, replaced and extended without collapsing the workflow into one monolithic application.